the water is a block it is not going back up the tube
bateria falls with gravity
the force of co2 is pushing from the wort to the end of the tube
that said, I guess there can be a concern about in infection in the water. I just never have worried about it. It is your beer not mine so do as you wish.
I use a Speidel fermenter, it is a 7.9 gallon so I have 2.4 gallon head room, when I used glass carboys and only had 1 gallon head room I often used blow off tubes for beers I knew were going go off big. Using a quart jar for the bubbler I had quite a lot of stuff in there, I ASSUMED it was just blown off yeast and proteins. I never had a problem. HOWEVER ASSUMPTIONS are just that. I cannot guarantee it is correct. So IF you are uncomfortable, change it. Remember this is your beer.